fmdtools.define.architecture

Package for defining system Architecture.

The architecture subpackage provides a representation of Architecture which may be used to represent aggregations/interactions of blocks in an overall combined simulation.

Different types of architectures are provided in the following modules:

fmdtools.define.architecture.base	Defines base Architecture class used by other architecture classes.
fmdtools.define.architecture.action	Defines classes for representing action architectures.
fmdtools.define.architecture.component	Defines ComponentArchitecture class to represent component architectures.
fmdtools.define.architecture.function	Defines classes for representing functional architectures.
fmdtools.define.architecture.geom	Defines GeomArchitecture class for representing multiple geometries in a Environment.

fmdtools.define.architecture.base

Defines base Architecture class used by other architecture classes.

Includes: - Architecture class defining architectures. - ArchitectureGraph class which represents Architecture in a ModelGraph.

class fmdtools.define.architecture.base.Architecture(*args, as_copy=False, h={}, **kwargs)

Bases: Simulable

Superclass for architectures.

Architectures are distinguished from Block classes in that they have flexible role dictionaries that are populated using add_xxx methods in an overall user-defined init_architecture method.

This method is called for a copy using the as_copy option, which copies passed flexible roles.

add_flex_role_obj(flex_role, name, objclass=<class 'fmdtools.define.object.base.BaseObject'>, use_copy=False, **kwargs)

Add a flexible role object to the architecture.

Used for add_fxn, add_flow, etc methods in subclasses. If called during copying (self.as_copy=True), the object is copied instead of instantiated.

Parameters:

• flex_role (str) – Name of the role dictionary to initialize the object in.

• name (str) – Name of the object

• objclass (class, optional) – Class to instantiate in the dict. The default is BaseObject.

• as_copy (bool) – Whether to instantiate obj as a copy. The default is fault.

• **kwargs (kwargs) – Non-default kwargs to send to the object class.

add_flow(name, fclass=<class 'fmdtools.define.flow.base.Flow'>, **kwargs)

Add a flow with given attributes to the model.

Parameters:

• name (str) – Unique flow name to give the flow in the model

• fclass (Class, optional) – Class to instantiate (e.g. CommsFlow, MultiFlow). Default is Flow. Class must take flowname, p, s as input to __init__() May alternatively provide already-instanced object.

• kwargs (kwargs) – Dicts for non-default values to p, s, etc

add_flows(*names, fclass=<class 'fmdtools.define.flow.base.Flow'>, **kwargs)

Add a set of flows with the same type and initial parameters.

Parameters:

• flownames (list) – Unique flow names to give the flows in the model

• fclass (Class, optional) – Class to instantiate (e.g. CommsFlow, MultiFlow). Default is Flow. Class must take flowname, p, s as input to __init__() May alternatively provide already-instanced object.

• kwargs (kwargs) – Dicts for non-default values to p, s, etc

add_sim(flex_role, name, simclass, *flownames, **kwargs)

Add a Simulable to the given flex_role.

Parameters:

• flex_role (str) – Name of the flexible role to add to.

• name (str) – Name to give the Simulable.

• simclass (Simulable) – Simulable to instantiate.

• flownames (list) – List of flows to associate with the function.

• **kwargs (kwargs) – Flows, dicts for non-default values to p, s, etc.

add_subgraph_edges(g, cond_edges=True, flow_edges=True, **kwargs)

Add edges connecting the objects (conditions and flows) to a graph.

as_copy

as_modelgraph(gtype=<class 'fmdtools.define.architecture.base.ArchitectureGraph'>, **kwargs)

Create and return the corresponding ModelGraph for the Object.

base_type()

Return fmdtools type of the model class.

build(update_seed=True, **kwargs)

Construct the overall model structure.

Use in subclasses to build the model after init_architecture is called.

Parameters:

update_seed (bool) – Whether to update the seed

check_role(roletype, rolename)

Check that ‘arch_xa’ role is used for the arch.

copy(flows={}, **kwargs)

Copy the architecture at the current state.

Parameters:

flows (dict) – Dict of flows to use in the copy.

Returns:

copy – Copy of the curent architecture.

Return type:

Architecture

flexible_roles = ['flows']

flows

flows_of_type(ftype)

Return the set of flows for each flow type.

flowtypes()

Return the set of flow types used in the model.

get_all_possible_track()

Get all possible tracking options.

get_flows(*flownames, all_if_empty=True)

Return a list of the model flow objects.

get_rand_states(auto_update_only=False)

Get dictionary of random states throughout the model objs.

h

init_architecture(*args, **kwargs)

Use to initialize architecture.

init_flexible_roles(**kwargs)

Initialize flexible roles.

If initializing as a copy, uses a passed copy instead.

Parameters:

**kwargs (kwargs) – Existing roles (if any).

is_dynamic()

Determine if dynamic (False by default).

is_static()

Determine if static (False by default).

m

reset()

Reset the architecture and its contained objects.

roletype = 'arch'

update_seed(seed=[])

Update model seed and the seed in all contained roles.

Must have an associated Rand role.

Parameters:

seed (int, optional) – Seed to use. The default is [].

class fmdtools.define.architecture.base.ArchitectureGraph(mdl, get_states=True, time=0.0, check_info=False, **kwargs)

Bases: ExtModelGraph

Base ModelGraph for Architectures.

draw_from(*args, rem_ind=2, **kwargs)

Set from a history (removes prefixes so it works at top level).

nx_from_obj(mdl, with_root=False, **kwargs)

Generate the networkx.graph object corresponding to the model.

Parameters:

mdl (FunctionArchitecture) – Model to create the graph representation of

Returns:

g – networkx.Graph representation of model functions and flows (along with their attributes)

Return type:

networkx.Graph

set_nx_states(mdl, **kwargs)

Set the states of the graph.

fmdtools.define.architecture.base.check_model_pickleability(model, try_pick=False)

Check to see which attributes of a model object will pickle.

Provides more detail about functions/flows.

fmdtools.define.architecture.action

Defines classes for representing action architectures.

Defines classes: - ActionArchitecture class for representing action architectures. - ActionArchitectureGraph: Shows a visualization of the internal Action

Sequence Graph of the Function Block, with Sequences as edges, with Flows (circular) and Actions (square) as nodes.

• ActionArchitectureActGraph: Variant of ActionArchitectureGraph where only the sequence between actions is shown.

• ActionArchitectureFlowGraph: Variant of ActionArchitectureGraph where only the flow relationships between actions is shown.

The ActionArchitecture class is used to represent a sequenced of action taken by an agent. It is a composition of instantiated Action objects, Flow objects, and conditions as shown below:

Example Action Architecture connecting action objects with flow objects and conditions.

In the Human action architecture, a human operator percieves and acts on a hazard and the total number of hazards acted on is recorded in the outcome flow. This can also be represented in FRDL using:

Propagation network of example Action Architecture.

For more info on this example, see: The Action Sequence Graph Demo Model.

class fmdtools.define.architecture.action.ActionArchitecture(**kwargs)

Bases: Architecture

Construct the Action Sequence Graph with the given parameters.

Parameters:

• initial_action (str/list) –

  Initial action to set as active. Default is ‘auto’

  • ’auto’ finds the starting node of the graph and uses it

  • ’ActionName’ sets the given action as the first active action

  • providing a list of actions will set them all to active

  (if multi-state rep is used)

• state_rep ('finite-state'/'multi-state') –

  How the states of the system are represented. Default is ‘finite-state’

  • ’finite-state’ means only one action in the system can be active at once (i.e., a finite state machine)

  • ’multi-state’ means multiple actions can be performed at once

• max_action_prop ('until_false'/'manual'/int) –

  How actions progress. Default is ‘until_false’

  • ’until_false’ means actions are simulated until all outgoing conditions are false

  • providing an integer places a limit on the number of actions that can be

  performed per timestep

• proptype ('static'/'dynamic'/'manual') –

  Which propagation step to execute the Action Sequence Graph in. Default is ‘dynamic’

  • ’manual’ means that the propagation is performed manually

  (defined in a behavior method)

• per_timestep (bool) – Defines whether the action sequence graph is reset to the initial state each time-step (True) or stays in the current action (False). Default is False.

action_graph

active_actions

acts

add_act(name, actclass, *flownames, **fkwargs)

Associate an Action with the architecture. Called after add_flow.

Parameters:

• name (str) – Internal Name for the Action

• actclass (Action) – Action class to instantiate

• *flownames (flow) – Flows (optional) which connect the actions

• duration – Duration of the action. Default is 0.0

• **kwargs (any) – kwargs to instantiate the Action with.

add_cond(start_action, end_action, name='auto', condition='pass')

Associate a Condition with the ActionArchitecture.

Conditions specify when to precede from one action to the next.

Parameters:

• start_action (str) – Action where the condition is checked

• end_action (str) – Action that the condition leads to.

• name (str) – Name for the condition. Defaults to numbered conditions if none are provided.

• condition (method) – Method in the class to use as a condition. Defaults to self.condition_pass if none are provided.

as_modelgraph(gtype=<class 'fmdtools.define.architecture.action.ActionArchitectureGraph'>, **kwargs)

Create and return the corresponding ModelGraph for the Object.

base_type()

Return fmdtools type of the model class.

build(**kwargs)

Construct the overall model structure.

Use in subclasses to build the model after init_architecture is called.

Parameters:

update_seed (bool) – Whether to update the seed

cond_pass()

conds

container_m

alias of Mode

copy(**kwargs)

Copy the architecture at the current state.

Parameters:

flows (dict) – Dict of flows to use in the copy.

Returns:

copy – Copy of the curent architecture.

Return type:

Architecture

default_track = ('acts', 'flows', 'active_actions', 'i')

flexible_roles = ['flows', 'acts', 'conds']

flow_graph

initial_action = 'auto'

is_dynamic()

Determine if dynamic based on self.proptype.

is_static()

Determine if static based on self.proptype.

m

max_action_prop = 'until_false'

per_timestep = False

proptype = 'dynamic'

reset()

Reset the architecture and its contained objects.

rolename = 'aa'

roletypes = ['container', 'flow', 'act', 'cond']

set_active_actions(actions)

Set given action(s) as active.

set_initial_active_action()

state_rep = 'finite-state'

The ActionArchitecture class can further be represented graphically using the ActionArchitectureGraph class:

class fmdtools.define.architecture.action.ActionArchitectureGraph(mdl, get_states=True, time=0.0, check_info=False, **kwargs)

Bases: ArchitectureGraph

Create a visual representation of an Action Architecture.

Represents:

• Sequence as edges

• Flows as (circular) Nodes

• Actions as (square) Nodes

Examples

>>> aag = ActionArchitectureGraph(ExampleActionArchitecture())
>>> aag.g.nodes()
NodeView(('act_1', 'exf', 'act_2'))
>>> aag.g.edges()
OutEdgeView([('act_1', 'exf'), ('act_1', 'act_2'), ('act_2', 'exf')])

draw_from(time, history=, **kwargs)

Set from a history (removes prefixes so it works at top level).

draw_graphviz(layout='twopi', overlap='voronoi', **kwargs)

Call Graph.draw_graphviz.

nx_from_obj(aa, **kwargs)

Create Graph for ActionArchitecture.

set_edge_labels(title='edgetype', title2='', subtext='name', **edge_label_styles)

Set / define the edge labels.

Parameters:

• title (str, optional) – property to get for title text. The default is ‘label’.

• title2 (str, optional) – property to get for title text after the colon. The default is ‘’.

• subtext (str, optional) – property to get for the subtext. The default is ‘’.

• **edge_label_styles (dict) – edgeStyle arguments to overwrite.

set_node_styles(active={}, **node_styles)

Set self.node_styles and self.edge_groups given the provided node styles.

Parameters:

**node_styles (dict, optional) – Dictionary of tags, labels, and style kwargs for the nodes that overwrite the default. Has structure {tag:{label:kwargs}}, where kwargs are the keyword arguments to nx.draw_networkx_nodes. The default is {“label”:{}}.

set_nx_states(aa, **kwargs)

Attach state and fault information to the underlying graph.

Parameters:

aa (ActionArchitecture) – Underlying action sequence graph object to get states from

fmdtools.define.architecture.component

Defines ComponentArchitecture class to represent component architectures.

class fmdtools.define.architecture.component.ComponentArchitecture(**kwargs)

Bases: Architecture

Class defining Component Architectures.

add_comp(name, compclass, *flownames, **kwargs)

Associate a Component with the architecture. Called after add_flow.

Parameters:

• name (str) – Internal Name for the Component

• compclass (Component) – Component class to instantiate

• *flownames (flow) – Flows (optional) which connect the components

• **kwargs (any) – kwargs to instantiate the Component with

comps

container_m

alias of Mode

flexible_roles = ['flows', 'comps']

rolename = 'ca'

roletypes = ['container', 'flow', 'comp']

fmdtools.define.architecture.function

Defines classes for representing functional architectures.

Defines classes:

• FunctionArchitecture class to represent functional architecture.

• FunctionArchitectureGraph: Graphs Model of functions and flow for display where both functions and flows are nodes.

• FunctionArchitectureFlowGraph: Graphs Model of flows for display, where flows are set as nodes and connections (via functions) are edges.

• FunctionArchitectureCompGraph: Graphs Model of functions, and flows, with component containment relationships shown for functions.

• FunctionArchitectureFxnGraph: Graphs representation of the functions of the model, where functions are nodes and flows are edges

• FunctionArchitectureTypeGraph: Graph representation of model Classes, showing the containment relationship between function classes and flow classes in the model.

The FunctionArchitecture class is used to define the high-level function-flow structure of a system model. It is a composition of instantiated Function and Flow objects, as shown below:

Example Function Architecture connecting function objects with flow objects.

In FRDL, this object may be represented as:

Example Function Architecture propagation structure represented in FRDL.

To define a FunctionArchitecture class, it can be helpful to use the following code template:

Code template for FunctionArchitecture classes.

class fmdtools.define.architecture.function.FunctionArchitecture(h={}, **kwargs)

Bases: Architecture

Class representing a functional architecture.

Functional architectures enable the execution of multiple Function objects interacting with each other over time. The FunctionArchitecture uses an object-oriented, undirected graph-based model representation to enable the arbitrary propagation of flow states through the functions of the system. As opposed to a procedural directed graph-based model representation, in which each function has an ``input’’ and ``output’’, the undirected graph approach enables one to propagate behaviors in multiple directions. For example, in a pump system, closing a valve can be modelled to not just reduce flow in the downstream pipe, but also increase pressure in upstream pipes.

Flexible Roles

flowsdict

dictionary of flows objects in the model indexed by name

fxnsdict

dictionary of functions in the model indexed by name

Special Attributes

functionorderOrderedSet

Keeps track of function dynamic execution order

staticfxnsOrderedSet

Keeps track of which functions run in static execution step

dynamicfxnsOrderedset

Keeps track of which functions run in dynamic execution step

staticflowslist

Flows to keep track of in static execution step

graphnetworkx graph

multigraph view of functions and flows

Examples

>>> class ExFxnArch(FunctionArchitecture):
...     container_p = ExampleParameter
...     def init_architecture(self, **kwargs):
...         self.add_flow("exf", ExampleFlow, s={'x': 0.0, 'y': 0.0})
...         self.add_fxn("ex_fxn", ExampleFunction, "exf", p=self.p)
...         self.add_fxn("ex_fxn2", ExampleFunction, "exf", p=self.p)

>>> exfa = ExFxnArch(name="exfa")
>>> exfa
exfa ExFxnArch
FUNCTIONS:
ex_fxn ExampleFunction
- ExampleState(x=1.0, y=1.0)
- ExampleMode(mode=standby, faults=set())
ex_fxn2 ExampleFunction
- ExampleState(x=1.0, y=1.0)
- ExampleMode(mode=standby, faults=set())
FLOWS:
exf ExampleFlow flow: ExampleState(x=0.0, y=0.0)

This type of functional architecture only has dynamic functions:

>>> exfa.dynamicfxns
OrderedSet(['ex_fxn', 'ex_fxn2'])
>>> exfa.staticfxns
OrderedSet()

This can in turn be simulated using FunctionArchitecture’s built-in .propagate method. Note how the flow exf accumulates both ex_fxn and ex_fxn2 as reflected in their behavior methods:

>>> exfa.propagate(1.0)
>>> exfa
exfa ExFxnArch
FUNCTIONS:
ex_fxn ExampleFunction
- ExampleState(x=2.0, y=1.0)
- ExampleMode(mode=standby, faults=set())
ex_fxn2 ExampleFunction
- ExampleState(x=2.0, y=1.0)
- ExampleMode(mode=standby, faults=set())
FLOWS:
exf ExampleFlow flow: ExampleState(x=4.0, y=0.0)

>>> exfa.propagate(2.0)
>>> exfa
exfa ExFxnArch
FUNCTIONS:
ex_fxn ExampleFunction
- ExampleState(x=3.0, y=1.0)
- ExampleMode(mode=standby, faults=set())
ex_fxn2 ExampleFunction
- ExampleState(x=3.0, y=1.0)
- ExampleMode(mode=standby, faults=set())
FLOWS:
exf ExampleFlow flow: ExampleState(x=10.0, y=0.0)

add_fxn(name, fclass, *flownames, **fkwargs)

Instantiate a given function in the model.

Parameters:

• name (str) – Name to give the function.

• fclass (Class) – Class to instantiate the function as. If no class has been developed, the user can send the block.GenericFxn class.

• flownames (list) – List of flows to associate with the function.

• args_f (dict.) – Other parameters to send to the __init__ method of the function class

• fkwargs (dict) – Parameters to send to __init__ method of the Function superclass

as_modelgraph(gtype=<class 'fmdtools.define.architecture.function.FunctionArchitectureGraph'>, **kwargs)

Create and return the corresponding ModelGraph for the Object.

base_type()

Return fmdtools type of the model class.

build(require_connections=True, **kwargs)

Build the model graph after the functions have been added.

calc_repaircost(additional_cost=0, default_cost=0, max_cost=inf)

Calculate the repair cost of the fault modes in the model.

Uses given mode cost information for each function mode (in fxn.m).

Parameters:

• additional_cost (int/float) – Additional cost to add if there are faults in the model. Default is 0.

• default_cost (int/float) – Cost to use for each fault mode if no fault cost information given in assoc_faultmodes/ Default is 0.

• max_cost (int/float) – Maximum cost of repair (e.g. cost of replacement). Default is np.inf

Returns:

repair_cost – Cost of repairing the fault modes in the given model

Return type:

float

construct_graph(require_connections=True)

Create .graph nx.graph representation of the model.

container_m

alias of Mode

default_name = 'model'

default_track = ('fxns', 'flows', 'i')

dynamicfxns

flexible_roles = ['flows', 'fxns']

flowtypes_for_fxnclasses()

Return the flows required by each function class in the model (as a dict).

functionorder

fxnclasses()

Return the set of class names used in the model.

fxns

fxns_of_class(ftype)

Return dict of funcitons corresponding to the given class name ftype.

get_memory()

Return the approximate memory usage of the model.

Includes profile of fxn/flow memory usage.

graph

is_dynamic()

Determine if dynamic based on containment of dynamic functions.

is_static()

Determine if static based on containment of static functions.

plot_dynamic_run_order(rotateticks=False, title='Dynamic Run Order')

Plot the run order for the model during the dynamic propagation step.

The x-direction is the order of each function executed and the y are the corresponding flows acted on by the given methods.

Parameters:

• rotateticks (Bool, optional) – Whether to rotate the x-ticks (for bigger plots). The default is False.

• title (str, optional) – String to use for the title (if any). The default is “Dynamic Run Order”.

Returns:

• fig (figure) – Matplotlib figure object

• ax (axis) – Corresponding matplotlib axis

prop_static(time, run_stochastic=False)

Propagate behaviors through model graph (static propagation step).

Parameters:

• time (float) – Current time-step

• run_stochastic (bool) – Whether to run stochastic behaviors or use default values. Default is False. Can set as ‘track_pdf’ to calculate/track the probability densities of random states over time.

propagate(time, fxnfaults={}, disturbances={}, proptype='both', run_stochastic=False)

Inject and propagates faults through the graph at one time-step.

Parameters:

• time (float) – The current time-step.

• fxnfaults (dict) – Faults to inject during this propagation step. With structure {‘function’:[‘fault1’, ‘fault2’…]}

• disturbances (dict) – Variables to change during this propagation step. With structure {‘function.var1’:value}

• proptype (str) – Whether the propagate ‘static’ or ‘dynamic’ behaviors, or ‘both’. Default is ‘both’.

• run_stochastic (bool) – Whether to run stochastic behaviors or use default values. Default is False. Can set as ‘track_pdf’ to calculate/track the probability densities of random states over time.

reset()

Reset the model to the initial state (with no faults, etc).

return_probdens()

Return the probability density of the model distributions.

rolename = 'fa'

roletypes = ['container', 'flow', 'fxn']

set_functionorder(functionorder)

Manually set the order of functions to be executed.

(otherwise it will be executed based on the sequence of add_fxn calls)

staticflows

staticfxns

The FunctionArchitecture class can be represented with a number of dedicated graph classes, below:

class fmdtools.define.architecture.function.FunctionArchitectureGraph(mdl, get_states=True, time=0.0, check_info=False, **kwargs)

Bases: ArchitectureGraph

Graph of FunctionArchitecture, where both functions and flows are nodes.

If get_states option is used on instantiation, a states dict is associated with the edges/nodes which can then be used to visualize function/flow attributes.

Examples

>>> efa = FunctionArchitectureGraph(ExFxnArch())
>>> efa.g.nodes()
NodeView(('exfxnarch.flows.exf', 'exfxnarch.fxns.ex_fxn', 'exfxnarch.fxns.ex_fxn2'))
>>> efa.g.edges()
OutEdgeView([('exfxnarch.fxns.ex_fxn', 'exfxnarch.flows.exf'), ('exfxnarch.fxns.ex_fxn2', 'exfxnarch.flows.exf')])

draw_graphviz(layout='twopi', overlap='voronoi', **kwargs)

Draw the graph using pygraphviz for publication-quality figures.

Note that the style may not match one-to-one with the defined none/edge styles.

Parameters:

• disp (bool) – Whether to display the plot. The default is True.

• saveas (str) – File to save the plot as. The default is ‘’ (which doesn’t save the plot’).

• **kwargs (kwargs) – Arguments for various supporting functions: (set_pos, set_edge_styles, set_edge_labels, set_node_styles, set_node_labels, etc) Can also provide kwargs for Digraph() initialization.

Returns:

dot – Graph object corresponding to the figure.

Return type:

PyGraphviz DiGraph

gen_func_arch_graph(mdl)

Generate function architecture graph.

get_dynamicnodes(mdl)

Get dynamic node information for set_exec_order.

get_multi_edges(graph, subedges)

Attach functions/flows (subedges arg) to edges.

Parameters:

• graph (networkx graph) – Graph of model to represent

• subedges (list) – nodes from the full graph which will become edges in the subgraph (e.g., individual flows)

Returns:

flows – Dictionary of edges with keys representing each sub-attribute of the edge (e.g., flows)

Return type:

dict

get_staticnodes(mdl)

Get static node information for set_exec_order.

set_exec_order(mdl, static={}, dynamic={}, next_edges={}, label_order=True, label_tstep=True)

Overlay FunctionArchitectureGraph execution order data on graph structure.

Parameters:

• mdl (Model) – Model to plot the execution order of.

• static (dict/False, optional) – kwargs to overwrite the default style for functions/flows in the static execution step. If False, static functions are not differentiated. The default is {}.

• dynamic (dict/False, optional) – kwargs to overwrite the default style for functions/flows in the dynamic execution step. If False, dynamic functions are not differentiated. The default is {}.

• next_edges (dict) – kwargs to overwrite the default style for edges indicating the flow order. If False, these edges are not added. the default is {}.

• label_order (bool, optional) – Whether to label execution order (with a number on each node). The default is True.

• label_tstep (bool, optional) – Whether to label each timestep (with a number in the subtitle). The default is True.

set_flow_nodestates(mdl, with_root=True)

Attach attributes to Graph notes corresponding to flow states.

Parameters:

mdl (Model) – Model to represent

set_fxn_nodestates(mdl, with_root=True)

Attach attributes to Graph corresponding to function states.

Parameters:

• mdl (Model) – Model to represent

• time (float) – Time to execute indicators at. Default is 0.0

class fmdtools.define.architecture.function.FunctionArchitectureFxnGraph(mdl, get_states=True, time=0.0, check_info=False, **kwargs)

Bases: FunctionArchitectureGraph

Create a graph representation of the functions of the model.

In this graph, functions are nodes and flows are edges.

Examples

>>> efa = FunctionArchitectureFxnGraph(ExFxnArch())
>>> efa.g.nodes()
NodeView(('exfxnarch.fxns.ex_fxn', 'exfxnarch.fxns.ex_fxn2'))
>>> efa.g.edges()
EdgeView([('exfxnarch.fxns.ex_fxn', 'exfxnarch.fxns.ex_fxn2')])
>>> efa.g.edges[('exfxnarch.fxns.ex_fxn', 'exfxnarch.fxns.ex_fxn2')]
{'flows': "['exfxnarch.flows.exf']", 'edgetype': 'flows', 'exfxnarch.flows.exf': {'s': ExampleState(x=0.0, y=0.0), 'indicators': []}}

draw_from(*args, rem_ind=0, **kwargs)

Set from a history (removes prefixes so it works at top level).

nx_from_obj(mdl)

Generate the networkx.graph object corresponding to the model.

Parameters:

mdl (FunctionArchitecture) – Model to create the graph representation of

Returns:

g – networkx.Graph representation of model functions and flows (along with their attributes)

Return type:

networkx.Graph

set_degraded(other)

Set ‘degraded’ state in networkx graph.

Uses difference between states with another Graph object.

Parameters:

other (Graph) – (assumed nominal) Graph to compare to

set_edge_labels(title='edgetype', title2='', subtext='flows', **edge_label_styles)

Create labels using Labels.from_iterator for the edges in the graph.

Parameters:

• title (str, optional) – property to get for title text. The default is ‘id’.

• title2 (str, optional) – property to get for title text after the colon. The default is ‘’.

• subtext (str, optional) – property to get for the subtext. The default is ‘states’.

• **edge_label_styles (dict) – LabelStyle arguments to overwrite.

set_flow_edgestates(mdl)

set_nx_states(mdl)

Set the states of the graph.

class fmdtools.define.architecture.function.FunctionArchitectureFlowGraph(mdl, get_states=True, time=0.0, check_info=False, **kwargs)

Bases: FunctionArchitectureGraph

Create a Graph of FunctionArchitecture flows.

In this Graph, flows are set as nodes and connecting functions are edges.

Examples

>>> efa = FunctionArchitectureFlowGraph(ExFxnArch())
>>> efa.g.nodes()
NodeView(('exfxnarch.flows.exf',))
>>> efa.g.nodes['exfxnarch.flows.exf']
{'nodetype': 'Flow', 'classname': 'ExampleFlow', 'bipartite': 1, 's': ExampleState(x=0.0, y=0.0), 'indicators': []}

nx_from_obj(mdl, **kwargs)

Generate the networkx.graph object corresponding to the model.

Parameters:

mdl (FunctionArchitecture) – Model to create the graph representation of

Returns:

g – networkx.Graph representation of model functions and flows (along with their attributes)

Return type:

networkx.Graph

set_edge_labels(title='edgetype', title2='', subtext='functions', **edge_label_styles)

Create labels using Labels.from_iterator for the edges in the graph.

Parameters:

• title (str, optional) – property to get for title text. The default is ‘id’.

• title2 (str, optional) – property to get for title text after the colon. The default is ‘’.

• subtext (str, optional) – property to get for the subtext. The default is ‘states’.

• **edge_label_styles (dict) – LabelStyle arguments to overwrite.

set_nx_states(mdl, **kwargs)

Set the states of the graph.

class fmdtools.define.architecture.function.FunctionArchitectureTypeGraph(mdl, get_states=True, time=0.0, check_info=False, **kwargs)

Bases: FunctionArchitectureGraph

Creates a graph representation of FunctionArchitecture Classes.

Shows the containment relationship between function classes and flow classes in the model.

Examples

>>> efa = FunctionArchitectureTypeGraph(ExFxnArch())
>>> efa.g.nodes()
NodeView(('ExFxnArch', 'ExampleFunction', 'ExampleFlow'))
>>> efa.g.edges()
OutEdgeView([('ExFxnArch', 'ExampleFunction'), ('ExampleFunction', 'ExampleFlow')])

draw_graphviz(layout='dot', ranksep='2.0', **kwargs)

Draw the graph using pygraphviz for publication-quality figures.

Note that the style may not match one-to-one with the defined none/edge styles.

Parameters:

• disp (bool) – Whether to display the plot. The default is True.

• saveas (str) – File to save the plot as. The default is ‘’ (which doesn’t save the plot’).

• **kwargs (kwargs) – Arguments for various supporting functions: (set_pos, set_edge_styles, set_edge_labels, set_node_styles, set_node_labels, etc) Can also provide kwargs for Digraph() initialization.

Returns:

dot – Graph object corresponding to the figure.

Return type:

PyGraphviz DiGraph

nx_from_obj(mdl, withflows=True, **kwargs)

Return graph with just the type relationships of the function/flow classes.

Parameters:

• mdl (Model) – Model to represent

• withflows (bool, optional) – Whether to include flows, default is True

Returns:

g – networkx directed graph of the type relationships

Return type:

nx.DiGraph

set_degraded(nomg)

Set ‘degraded’ state in networkx graph.

Uses difference between states with another Graph object.

Parameters:

other (Graph) – (assumed nominal) Graph to compare to

set_exec_order(*args, **kwargs)

Overlay FunctionArchitectureGraph execution order data on graph structure.

Parameters:

• mdl (Model) – Model to plot the execution order of.

• static (dict/False, optional) – kwargs to overwrite the default style for functions/flows in the static execution step. If False, static functions are not differentiated. The default is {}.

• dynamic (dict/False, optional) – kwargs to overwrite the default style for functions/flows in the dynamic execution step. If False, dynamic functions are not differentiated. The default is {}.

• next_edges (dict) – kwargs to overwrite the default style for edges indicating the flow order. If False, these edges are not added. the default is {}.

• label_order (bool, optional) – Whether to label execution order (with a number on each node). The default is True.

• label_tstep (bool, optional) – Whether to label each timestep (with a number in the subtitle). The default is True.

set_nx_states(mdl)

Set the states of the graph.

set_pos(auto=True, **pos)

Set graph positions to given positions, (automatically or manually).

Parameters:

• auto (str, optional) – Whether to auto-layout the node position. The default is True. If a string is provided, calls method_layout, where method is the string provided

• overwrite (bool, optional) – Whether to overwrite the existing pos. Default is True.

• **pos (nodename=(x,y)) – Positions of nodes to set. Otherwise updates to the auto-layout or (0.5,0.5)

fmdtools.define.architecture.geom

Defines GeomArchitecture class for representing multiple geometries in a Environment.

Classes

GeomArchitecture: Architecture of multiple geometries. ExGeomArch: Example GeomArchitecture.

class fmdtools.define.architecture.geom.ExGeomArch(*args, as_copy=False, h={}, **kwargs)

Bases: GeomArchitecture

Example Geometric Architecture for testing etc.

as_copy

flows

h

init_architecture(**kwargs)

Initialize example geoms.

m

class fmdtools.define.architecture.geom.GeomArchitecture(*args, as_copy=False, h={}, **kwargs)

Bases: Architecture

Agglomeration of multiple geoms/shapes.

Architecture is defined using add_shape method in user-defined init_shapes method.

Examples

for an architecture with the geoms already defined:

>>> class ExGeomArch(GeomArchitecture):
...    def init_architecture(self):
...        self.add_point("ex_point", ExPoint)
...        self.add_line("ex_line", ExLine)
...        self.add_poly("ex_poly", ExPoly)

This can then be used in containing classes (e.g., environments) that need multiple geoms. We can then access the individual geoms in the geoms dict, e.g.,:

>>> ega = ExGeomArch()
>>> ega.geoms()['ex_point'].s
ExGeomState(occupied=False, buffer_around=1.0)
>>> ega.h
points.ex_point.s.occupied:   array(101)
points.ex_point.s.buffer_around: array(101)
lines.ex_line.s.occupied:     array(101)
lines.ex_line.s.buffer_around: array(101)
polys.ex_poly.s.occupied:     array(101)
polys.ex_poly.s.buffer_around: array(101)
>>> ega.return_mutables()
((False, 1.0), (False, 1.0), (False, 1.0), (-0.1, 0, 0.0, 1))

add_line(name, lclass=<class 'fmdtools.define.object.geom.GeomLine'>, **kwargs)

Add/instantiate an individual line to the overall architecture.

Parameters:

• name (str) – Name of the geom object to instantiate.

• gclass (Geom) – Class defining the geom.

• **kwargs (kwargs) – kwargs defining the object for gclass.

add_point(name, pclass=<class 'fmdtools.define.object.geom.GeomPoint'>, **kwargs)

Add/instantiate an individual point to the overall architecture.

Parameters:

• name (str) – Name of the geom object to instantiate.

• gclass (Geom) – Class defining the geom.

• **kwargs (kwargs) – kwargs defining the object for gclass.

add_poly(name, pclass=<class 'fmdtools.define.object.geom.GeomPoly'>, **kwargs)

Add/instantiate an individual polygon to the overall architecture.

Parameters:

• name (str) – Name of the geom object to instantiate.

• gclass (Geom) – Class defining the geom.

• **kwargs (kwargs) – kwargs defining the object for gclass.

all_at(*pt)

Find all geoms (and buffers) a given is at.

Parameters:

*pt (x,y) – x, y, z location to check.

Returns:

all_at – Names of geoms where the point is at (and their properties)

Return type:

dict

Examples

>>> exga = ExGeomArch()
>>> exga.all_at(1.0, 1.0)
{'ex_point': ['shape', 'on', 'around'], 'ex_line': ['shape', 'on', 'around'], 'ex_poly': ['shape', 'around']}
>>> exga.all_at(0.0, 0.0)
{'ex_line': ['shape', 'on', 'around'], 'ex_poly': ['shape', 'around']}
>>> exga.all_at(0.4, 0.3)
{'ex_point': ['on', 'around'], 'ex_line': ['on', 'around'], 'ex_poly': ['around']}

all_possible = ['points', 'lines', 'polys']

as_copy

base_type()

Return fmdtools type of the model class.

check_geom_class(gclass, baseclass)

Check that geom class/object inherits from given base class.

container_p

alias of Parameter

default_track = ['points', 'lines', 'polys']

flexible_roles = ['points', 'lines', 'polys']

flows

geoms()

Return a dict of all points, lines, and polygons.

h

init_architecture(**kwargs)

Use this placeholder method to define custom architectures.

m

rolename = 'ga'

show(geoms={'all': {}}, fig=None, ax=None, figsize=(4, 4), z=False, **kwargs)

Show the shapes of a GeomArchitecture all on one plot.

Parameters:

• geoms (dict, optional) – Individual shapes to plot and their corresponding kwargs. The default is {‘all’: {}}.

• fig (matplotlib.figure, optional) – Existing Figure. The default is None.

• ax (matplotlib.axis, optional) – Existing axis. The default is None.

• figsize (tuple, optional) – Size for figure (if instantiating). The default is (4, 4).

• z (bool/number, optional) – If plotting on a 3d axis, set z to a number which will be the z-level. The default is False.

• **kwargs (kwargs) – Overall kwargs to show.geom for all geoms.

Returns:

• fig (figure) – Matplotlib figure object

• ax (axis) – Corresponding matplotlib axis

show_from(hist, t, **kwargs)

Show the GeomArch at the given time in the provided history.

Parameters:

• hist (History) – History of states for the GeomArchitecture.

• t (int) – Time in the history to show the state of the GeomArchitecture at.

• **kwargs (kwargs) – Keyword arguments to GeomArchitecture.show().

Returns:

• fig (figure) – Matplotlib figure object

• ax (axis) – Corresponding matplotlib axis