upsp.kulite_comparison.plotting

highlight_pixels(image: numpy.ndarray, pixels: list, bgr: tuple)[source]
make_selection_area_images(df: pandas.core.frame.DataFrame, out_dir=None)[source]

Highlight selected Kulite comparison pixels in raw uPSP images

Parameters

  • df (pandas.DataFrame) –

    Records with the following columns:

    • ’Pipeline Directory’ : data pipeline top-level directory

    • ’Datapoint’ : datapoint identifier

    • ’Kulite Nearest Vertex’ : index of vertex nearest to Kulite

    • ’Kulite Name’ : name of kulite

    • ’Selection Vertices’ : string repr of list of indices of selected vertices, e.g., “[124,231,101]”

  • out_dir (str or None) – Directory for writing output images. If None, defaults to subdirectories of the current working directory named according to the ‘Pipeline Directory’ names.