7.3. pykes: Interact with Kestrel run matrix using CAPE

Usage:
$ pykes CMD [ARGS] [OPTIONS]
Sub-commands:
help

Display help message and exit

run

Run case in current folder

start

Setup, start, and/or submit cases

check

Check status of case(s)

apply

Interact with Kestrel run matrix using CAPE

approve

Mark selected cases as complete

archive

Archive cases; delete files not needed for post-processing

batch

Resubmit this command as a PBS/Slurm job

check-db

Check completion of all databook components

check-fm

Check completion of all force & moment components

check-ll

Check completion of all line load components

check-triqfm

Check completion of TriqFM components

clean

Remove extra files not necessary for running a case

dezombie

Delete job and clean-up stalled cases (aka ‘zombie’ cases)

exec

Run a shell command in folder of case(s)

extend

Extend unmarked cases

extract-fm

Extract averaged force & moment results

extract-ll

Compute and extract line load results

extract-pyfunc

Extract data from custom Python functions

extract-prop

Extract other scalar results

extract-timeseries

Extract time series data

extract-triqfm

Extract post-processed patch loads

extract-triqpt

Collect post-processed point sensor data

fail

Mark selected cases as ERRORs

qdel

Delete PBS/Slurm job of case(s)

report

Update automated PDF reports

rm

Delete entire case folders

skeleton

Clean up case folder; leave only key files

unarchive

Expand files from archive

unmark

Remove PASS/ERROR markings for selected cases

Options:
-h, --help

Print this help message and exit

-f, --file, --json JSON

Use the JSON (or YAML) file JSON

-j

List PBS/Slurm job ID in -c output

-n N

Submit at most N cases

-I INDS

Specific case indices, e.g. -I 4:8,12

--cons, --constraints CONS

Constraints on run matrix keys, e.g. "mach>1.0"

--re, --regex REGEX

Limit to cases containing regular expression REGEX

--filter TXT

Limit to cases containing the string TXT

--marked

Show only cases marked either PASS or ERROR

--unmarked

Show cases with no PASS/ERROR markings

--batch

Submit PBS/Slurm job and run this command there

-e, --exec EXEC

Execute the command EXEC

--no-restart

When submitting new jobs, only submit new cases {True}

--no-start

Set up but do not start (or submit) cases {True}

-q, --queue QUEUE

Submit to PBS/Slurm queue QUEUE, overrides value in JSON file

-u UID

Pretend to be user UID

-x PYSCRIPT

Execute Python script PYSCRIPT after reading JSON