Index

A

add_item() (bingo.util.probability_mass_function.ProbabilityMassFunction method) add_operator() (bingo.symbolic_regression.agraph.component_generator.ComponentGenerator method) add_trainer() (bingo.evolutionary_optimizers.fitness_predictor.FitnessPredictorFitnessFunction method) AddRandomIndividuals (class in bingo.variation.add_random_individuals) AgeFitness (class in bingo.selection.age_fitness) AgeFitnessEA (class in bingo.evolutionary_algorithms.age_fitness) AGraph (class in bingo.symbolic_regression.agraph.agraph)

agraph_similarity() (in module bingo.symbolic_regression.symbolic_regressor) AGraphCrossover (class in bingo.symbolic_regression.agraph.crossover) AGraphGenerator (class in bingo.symbolic_regression.agraph.generator) AGraphMutation (class in bingo.symbolic_regression.agraph.mutation) Archipelago (class in bingo.evolutionary_optimizers.archipelago) argument_validation() (in module bingo.util.argument_validation) automatic_simplify() (in module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification)

B

base (bingo.symbolic_regression.agraph.simplification_backend.expression.Expression property) beneficial_crossover_mutation_rate (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnosticsSummary attribute) beneficial_crossover_rate (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnosticsSummary attribute) beneficial_mutation_rate (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnosticsSummary attribute) beneficial_rate (bingo.evolutionary_algorithms.ea_diagnostics.GeneticOperatorSummary attribute) bingo module bingo.chromosomes module bingo.chromosomes.chromosome module bingo.chromosomes.crossover module bingo.chromosomes.generator module bingo.chromosomes.multiple_floats module bingo.chromosomes.multiple_values module bingo.chromosomes.mutation module bingo.evaluation module bingo.evaluation.evaluation module bingo.evaluation.fitness_function module bingo.evaluation.gradient_mixin module bingo.evaluation.random_subset_evaluation module bingo.evaluation.training_data module bingo.evolutionary_algorithms module bingo.evolutionary_algorithms.age_fitness module bingo.evolutionary_algorithms.ea_diagnostics module bingo.evolutionary_algorithms.evolutionary_algorithm module bingo.evolutionary_algorithms.generalized_crowding module bingo.evolutionary_algorithms.mu_comma_lambda module bingo.evolutionary_algorithms.mu_plus_lambda module bingo.evolutionary_optimizers module bingo.evolutionary_optimizers.archipelago module bingo.evolutionary_optimizers.checkpoint_controller module bingo.evolutionary_optimizers.evolutionary_optimizer module bingo.evolutionary_optimizers.fitness_predictor module bingo.evolutionary_optimizers.fitness_predictor_island module bingo.evolutionary_optimizers.island module bingo.evolutionary_optimizers.parallel_archipelago module bingo.evolutionary_optimizers.serial_archipelago module bingo.local_optimizers module bingo.local_optimizers.local_opt_fitness module bingo.local_optimizers.local_optimizer module bingo.local_optimizers.normalized_marginal_likelihood module bingo.local_optimizers.scipy_optimizer module bingo.local_optimizers.smcpy_optimizer module bingo.selection module bingo.selection.age_fitness module bingo.selection.deterministic_crowding module bingo.selection.generalized_crowding module bingo.selection.probabilistic_crowding module bingo.selection.probabilistic_tournament module

bingo.selection.selection module bingo.selection.tournament module bingo.stats module bingo.stats.hall_of_fame module bingo.stats.pareto_front module bingo.symbolic_regression module bingo.symbolic_regression.agraph module bingo.symbolic_regression.agraph.agraph module bingo.symbolic_regression.agraph.component_generator module bingo.symbolic_regression.agraph.crossover module bingo.symbolic_regression.agraph.evaluation_backend module bingo.symbolic_regression.agraph.evaluation_backend.evaluation_backend module bingo.symbolic_regression.agraph.evaluation_backend.operator_eval module bingo.symbolic_regression.agraph.generator module bingo.symbolic_regression.agraph.mutation module bingo.symbolic_regression.agraph.operator_definitions module bingo.symbolic_regression.agraph.simplification_backend module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification module bingo.symbolic_regression.agraph.simplification_backend.constant_folding module bingo.symbolic_regression.agraph.simplification_backend.expression module bingo.symbolic_regression.agraph.simplification_backend.interpreter module bingo.symbolic_regression.agraph.simplification_backend.optional_expression_modification module bingo.symbolic_regression.agraph.simplification_backend.simplification_backend module bingo.symbolic_regression.agraph.simplification_backend.simplify module bingo.symbolic_regression.agraph.string_generation module bingo.symbolic_regression.agraph.string_parsing module bingo.symbolic_regression.atomic_potential_regression module bingo.symbolic_regression.equation module bingo.symbolic_regression.equation_regressor module bingo.symbolic_regression.explicit_regression module bingo.symbolic_regression.implicit_regression module bingo.symbolic_regression.implicit_regression_schmidt module bingo.symbolic_regression.srbench_interface module bingo.symbolic_regression.symbolic_regressor module bingo.util module bingo.util.argument_validation module bingo.util.log module bingo.util.probability_mass_function module bingo.variation module bingo.variation.add_random_individuals module bingo.variation.var_and module bingo.variation.var_or module bingo.variation.variation module build_agraph_stack() (in module bingo.symbolic_regression.agraph.simplification_backend.interpreter) build_cas_expression() (in module bingo.symbolic_regression.agraph.simplification_backend.interpreter)

C

CheckpointController (class in bingo.evolutionary_optimizers.checkpoint_controller) Chromosome (class in bingo.chromosomes.chromosome) clear() (bingo.stats.hall_of_fame.HallOfFame method) coefficient (bingo.symbolic_regression.agraph.simplification_backend.expression.Expression property) command_array (bingo.symbolic_regression.agraph.agraph.AGraph attribute) (bingo.symbolic_regression.agraph.agraph.AGraph property) complexity (bingo.symbolic_regression.equation_regressor.EquationRegressor property) ComponentGenerator (class in bingo.symbolic_regression.agraph.component_generator) configure_logging() (in module bingo.util.log) CONSOLE_PRINT_MAP (in module bingo.symbolic_regression.agraph.string_generation) constants (bingo.symbolic_regression.agraph.agraph.AGraph attribute) (bingo.symbolic_regression.agraph.agraph.AGraph property)

copy() (bingo.chromosomes.chromosome.Chromosome method) (bingo.symbolic_regression.agraph.simplification_backend.expression.Expression method) Crossover (class in bingo.chromosomes.crossover) crossover_mutation_type_summary (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnostics attribute) (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnostics property) crossover_offspring (bingo.variation.var_and.VarAnd attribute) (bingo.variation.var_or.VarOr attribute) crossover_offspring_type (bingo.variation.variation.Variation attribute) crossover_type_summary (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnostics attribute) (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnostics property) crossover_types (bingo.variation.variation.Variation attribute) (bingo.variation.variation.Variation property)

D

depends_on (bingo.symbolic_regression.agraph.simplification_backend.expression.Expression property) DeterministicCrowding (class in bingo.selection.deterministic_crowding) detrimental_crossover_mutation_rate (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnosticsSummary attribute) detrimental_crossover_rate (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnosticsSummary attribute) detrimental_mutation_rate (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnosticsSummary attribute) detrimental_rate (bingo.evolutionary_algorithms.ea_diagnostics.GeneticOperatorSummary attribute) diagnostics (bingo.evolutionary_algorithms.evolutionary_algorithm.EvolutionaryAlgorithm attribute) (bingo.evolutionary_algorithms.generalized_crowding.GeneralizedCrowdingEA attribute) (bingo.evolutionary_algorithms.mu_comma_lambda.MuCommaLambda attribute) (bingo.evolutionary_algorithms.mu_plus_lambda.MuPlusLambda attribute)

DiagnosticsFilter (class in bingo.util.log) distance() (bingo.chromosomes.chromosome.Chromosome method) (bingo.chromosomes.multiple_values.MultipleValueChromosome method) (bingo.symbolic_regression.agraph.agraph.AGraph method) draw_sample() (bingo.util.probability_mass_function.ProbabilityMassFunction method) dump_fraction_of_population() (bingo.evolutionary_optimizers.island.Island method) dump_to_file() (bingo.evolutionary_optimizers.evolutionary_optimizer.EvolutionaryOptimizer method) (bingo.evolutionary_optimizers.parallel_archipelago.ParallelArchipelago method) dx_dt (bingo.symbolic_regression.implicit_regression.ImplicitTrainingData attribute) (bingo.symbolic_regression.implicit_regression.ImplicitTrainingData property)

E

ea_diagnostics (bingo.evolutionary_optimizers.evolutionary_optimizer.OptimizeResult attribute) EaDiagnostics (class in bingo.evolutionary_algorithms.ea_diagnostics) EaDiagnosticsSummary (class in bingo.evolutionary_algorithms.ea_diagnostics) engine (bingo.symbolic_regression.agraph.agraph.AGraph property) eq_string_to_command_array_and_constants() (in module bingo.symbolic_regression.agraph.string_parsing) eq_string_to_infix_tokens() (in module bingo.symbolic_regression.agraph.string_parsing) Equation (class in bingo.symbolic_regression.equation) EquationRegressor (class in bingo.symbolic_regression.equation_regressor) estimate_remaining_checkpoints() (bingo.evolutionary_optimizers.checkpoint_controller.CheckpointController method) eval_count (bingo.evaluation.evaluation.Evaluation attribute) (bingo.evaluation.evaluation.Evaluation property) (bingo.evaluation.fitness_function.FitnessFunction attribute) (bingo.evaluation.random_subset_evaluation.RandomSubsetEvaluation attribute) (bingo.local_optimizers.local_opt_fitness.LocalOptFitnessFunction attribute) (bingo.local_optimizers.local_opt_fitness.LocalOptFitnessFunction property) (bingo.local_optimizers.normalized_marginal_likelihood.NormalizedMarginalLikelihood attribute) (bingo.local_optimizers.normalized_marginal_likelihood.NormalizedMarginalLikelihood property) (bingo.local_optimizers.smcpy_optimizer.SmcpyOptimizer property) eval_kwargs (in module bingo.symbolic_regression.srbench_interface) evaluate() (in module bingo.symbolic_regression.agraph.evaluation_backend.evaluation_backend) evaluate_equation_at() (bingo.symbolic_regression.agraph.agraph.AGraph method) (bingo.symbolic_regression.equation.Equation method) evaluate_equation_with_local_opt_gradient_at() (bingo.symbolic_regression.agraph.agraph.AGraph method) (bingo.symbolic_regression.equation.Equation method)

evaluate_equation_with_x_gradient_at() (bingo.symbolic_regression.agraph.agraph.AGraph method) (bingo.symbolic_regression.equation.Equation method) evaluate_fitness_vector() (bingo.evaluation.fitness_function.VectorBasedFunction method) (bingo.symbolic_regression.atomic_potential_regression.PairwiseAtomicPotential method) (bingo.symbolic_regression.explicit_regression.ExplicitRegression method) (bingo.symbolic_regression.implicit_regression.ImplicitRegression method) (bingo.symbolic_regression.implicit_regression_schmidt.ImplicitRegressionSchmidt method) evaluate_model() (bingo.local_optimizers.smcpy_optimizer.SmcpyOptimizer method) evaluate_population() (bingo.evolutionary_optimizers.island.Island method) evaluate_with_derivative() (in module bingo.symbolic_regression.agraph.evaluation_backend.evaluation_backend) evaluation (bingo.evolutionary_algorithms.age_fitness.AgeFitnessEA attribute) (bingo.evolutionary_algorithms.evolutionary_algorithm.EvolutionaryAlgorithm attribute) (bingo.evolutionary_algorithms.generalized_crowding.GeneralizedCrowdingEA attribute) (bingo.evolutionary_algorithms.mu_comma_lambda.MuCommaLambda attribute) (bingo.evolutionary_algorithms.mu_plus_lambda.MuPlusLambda attribute) Evaluation (class in bingo.evaluation.evaluation) EvolutionaryAlgorithm (class in bingo.evolutionary_algorithms.evolutionary_algorithm) EvolutionaryOptimizer (class in bingo.evolutionary_optimizers.evolutionary_optimizer) evolve() (bingo.evolutionary_optimizers.evolutionary_optimizer.EvolutionaryOptimizer method) evolve_until_convergence() (bingo.evolutionary_optimizers.evolutionary_optimizer.EvolutionaryOptimizer method) ExplicitRegression (class in bingo.symbolic_regression.explicit_regression) ExplicitTrainingData (class in bingo.symbolic_regression.explicit_regression) exponent (bingo.symbolic_regression.agraph.simplification_backend.expression.Expression property) Expression (class in bingo.symbolic_regression.agraph.simplification_backend.expression)

F

filter() (bingo.util.log.DiagnosticsFilter method) (bingo.util.log.MpiFilter method) (bingo.util.log.StatsFilter method) fit() (bingo.symbolic_regression.equation_regressor.EquationRegressor method) (bingo.symbolic_regression.symbolic_regressor.SymbolicRegressor method) fit_set (bingo.chromosomes.chromosome.Chromosome attribute) (bingo.chromosomes.chromosome.Chromosome property) fitness (bingo.chromosomes.chromosome.Chromosome attribute) (bingo.chromosomes.chromosome.Chromosome property) (bingo.evolutionary_optimizers.evolutionary_optimizer.OptimizeResult attribute) (bingo.symbolic_regression.equation_regressor.EquationRegressor property)

fitness_function (bingo.evaluation.evaluation.Evaluation attribute) (bingo.evaluation.random_subset_evaluation.RandomSubsetEvaluation attribute) FitnessFunction (class in bingo.evaluation.fitness_function) FitnessPredictorFitnessFunction (class in bingo.evolutionary_optimizers.fitness_predictor) FitnessPredictorIndexGenerator (class in bingo.evolutionary_optimizers.fitness_predictor) FitnessPredictorIsland (class in bingo.evolutionary_optimizers.fitness_predictor_island) fold_constants() (in module bingo.symbolic_regression.agraph.simplification_backend.constant_folding) force_use_of_python_backends() (in module bingo.symbolic_regression.agraph.agraph) force_use_of_python_simplification() (in module bingo.symbolic_regression.agraph.agraph) forward_eval_function() (in module bingo.symbolic_regression.agraph.evaluation_backend.operator_eval) FORWARD_EVAL_MAP (in module bingo.symbolic_regression.agraph.evaluation_backend.operator_eval) FunctionArgChecker (class in bingo.util.argument_validation)

G

GeneralizedCrowding (class in bingo.selection.generalized_crowding) GeneralizedCrowdingEA (class in bingo.evolutionary_algorithms.generalized_crowding) generational_age (bingo.evolutionary_optimizers.archipelago.Archipelago attribute) (bingo.evolutionary_optimizers.evolutionary_optimizer.EvolutionaryOptimizer attribute) (bingo.evolutionary_optimizers.fitness_predictor_island.FitnessPredictorIsland attribute) (bingo.evolutionary_optimizers.island.Island attribute) (bingo.evolutionary_optimizers.parallel_archipelago.ParallelArchipelago attribute) (bingo.evolutionary_optimizers.serial_archipelago.SerialArchipelago attribute) generational_step() (bingo.evolutionary_algorithms.evolutionary_algorithm.EvolutionaryAlgorithm method) (bingo.evolutionary_algorithms.generalized_crowding.GeneralizedCrowdingEA method) (bingo.evolutionary_algorithms.mu_comma_lambda.MuCommaLambda method) (bingo.evolutionary_algorithms.mu_plus_lambda.MuPlusLambda method) Generator (class in bingo.chromosomes.generator) genetic_age (bingo.chromosomes.chromosome.Chromosome attribute) (bingo.chromosomes.chromosome.Chromosome property) GeneticOperatorSummary (class in bingo.evolutionary_algorithms.ea_diagnostics) get_best_fitness() (bingo.evolutionary_optimizers.evolutionary_optimizer.EvolutionaryOptimizer method) (bingo.evolutionary_optimizers.island.Island method) (bingo.evolutionary_optimizers.parallel_archipelago.ParallelArchipelago method) (bingo.evolutionary_optimizers.serial_archipelago.SerialArchipelago method) get_best_individual() (bingo.evolutionary_optimizers.evolutionary_optimizer.EvolutionaryOptimizer method) (bingo.evolutionary_optimizers.fitness_predictor_island.FitnessPredictorIsland method) (bingo.evolutionary_optimizers.island.Island method) (bingo.evolutionary_optimizers.parallel_archipelago.ParallelArchipelago method) (bingo.evolutionary_optimizers.serial_archipelago.SerialArchipelago method) (bingo.symbolic_regression.symbolic_regressor.SymbolicRegressor method) get_best_population() (bingo.symbolic_regression.symbolic_regressor.SymbolicRegressor method) get_best_solution() (in module bingo.symbolic_regression.srbench_interface) get_complexity() (bingo.symbolic_regression.agraph.agraph.AGraph method) (bingo.symbolic_regression.equation.Equation method)

get_ea_diagnostic_info() (bingo.evolutionary_optimizers.evolutionary_optimizer.EvolutionaryOptimizer method) (bingo.evolutionary_optimizers.island.Island method) (bingo.evolutionary_optimizers.parallel_archipelago.ParallelArchipelago method) (bingo.evolutionary_optimizers.serial_archipelago.SerialArchipelago method) get_fitness_and_gradient() (bingo.evaluation.gradient_mixin.GradientMixin method) (bingo.evaluation.gradient_mixin.VectorGradientMixin method) get_fitness_evaluation_count() (bingo.evolutionary_optimizers.evolutionary_optimizer.EvolutionaryOptimizer method) (bingo.evolutionary_optimizers.island.Island method) (bingo.evolutionary_optimizers.parallel_archipelago.ParallelArchipelago method) (bingo.evolutionary_optimizers.serial_archipelago.SerialArchipelago method) get_fitness_vector_and_jacobian() (bingo.evaluation.gradient_mixin.VectorGradientMixin method) (bingo.symbolic_regression.explicit_regression.ExplicitRegression method) get_formatted_string() (bingo.symbolic_regression.agraph.agraph.AGraph method) (in module bingo.symbolic_regression.agraph.string_generation) get_gens_to_evolve() (bingo.evolutionary_optimizers.checkpoint_controller.CheckpointController method) get_local_optimization_params() (bingo.chromosomes.multiple_floats.MultipleFloatChromosome method) (bingo.symbolic_regression.agraph.agraph.AGraph method) get_log_header() (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnostics method) get_log_stats() (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnostics method) get_number_local_optimization_params() (bingo.chromosomes.chromosome.Chromosome method) (bingo.chromosomes.multiple_floats.MultipleFloatChromosome method) (bingo.chromosomes.multiple_values.MultipleValueChromosome method) (bingo.symbolic_regression.agraph.agraph.AGraph method) get_number_of_operators() (bingo.symbolic_regression.agraph.component_generator.ComponentGenerator method) get_number_of_terminals() (bingo.symbolic_regression.agraph.component_generator.ComponentGenerator method) get_pareto_front() (bingo.symbolic_regression.symbolic_regressor.SymbolicRegressor method) get_population() (in module bingo.symbolic_regression.srbench_interface) get_true_fitness_for_trainer() (bingo.evolutionary_optimizers.fitness_predictor.FitnessPredictorFitnessFunction method) get_utilized_commands() (bingo.symbolic_regression.agraph.agraph.AGraph method) (in module bingo.symbolic_regression.agraph.simplification_backend.simplification_backend) GradientMixin (class in bingo.evaluation.gradient_mixin)

H

hall_of_fame (bingo.evolutionary_optimizers.archipelago.Archipelago attribute) (bingo.evolutionary_optimizers.evolutionary_optimizer.EvolutionaryOptimizer attribute) (bingo.evolutionary_optimizers.fitness_predictor_island.FitnessPredictorIsland attribute) (bingo.evolutionary_optimizers.fitness_predictor_island.FitnessPredictorIsland property) (bingo.evolutionary_optimizers.island.Island attribute) (bingo.evolutionary_optimizers.parallel_archipelago.ParallelArchipelago attribute) (bingo.evolutionary_optimizers.serial_archipelago.SerialArchipelago attribute)

HallOfFame (class in bingo.stats.hall_of_fame) hyper_params (in module bingo.symbolic_regression.srbench_interface)

I

ImplicitRegression (class in bingo.symbolic_regression.implicit_regression) ImplicitRegressionSchmidt (class in bingo.symbolic_regression.implicit_regression_schmidt) ImplicitTrainingData (class in bingo.symbolic_regression.implicit_regression) infix_to_postfix() (in module bingo.symbolic_regression.agraph.string_parsing) input_x_dimension (bingo.symbolic_regression.agraph.component_generator.ComponentGenerator attribute) insert() (bingo.stats.hall_of_fame.HallOfFame method) IS_ARITY_2_MAP (in module bingo.symbolic_regression.agraph.operator_definitions)

is_constant_valued (bingo.symbolic_regression.agraph.simplification_backend.expression.Expression property) is_one() (bingo.symbolic_regression.agraph.simplification_backend.expression.Expression method) IS_TERMINAL_MAP (in module bingo.symbolic_regression.agraph.operator_definitions) is_zero() (bingo.symbolic_regression.agraph.simplification_backend.expression.Expression method) island (bingo.evolutionary_optimizers.parallel_archipelago.ParallelArchipelago attribute) Island (class in bingo.evolutionary_optimizers.island) islands (bingo.evolutionary_optimizers.serial_archipelago.SerialArchipelago attribute) items (bingo.util.probability_mass_function.ProbabilityMassFunction attribute)

L

last_crossover_types (bingo.chromosomes.multiple_values.SinglePointCrossover attribute) (bingo.symbolic_regression.agraph.crossover.AGraphCrossover attribute) last_mutation_type (bingo.chromosomes.multiple_values.SinglePointMutation attribute) (bingo.symbolic_regression.agraph.mutation.AGraphMutation attribute)

LATEX_PRINT_MAP (in module bingo.symbolic_regression.agraph.string_generation) load_evolutionary_optimizer_from_file() (in module bingo.evolutionary_optimizers.evolutionary_optimizer) load_parallel_archipelago_from_file() (in module bingo.evolutionary_optimizers.parallel_archipelago) LocalOptFitnessFunction (class in bingo.local_optimizers.local_opt_fitness) LocalOptimizer (class in bingo.local_optimizers.local_optimizer)

M

map() (bingo.symbolic_regression.agraph.simplification_backend.expression.Expression method) mean_absolute_error() (in module bingo.evaluation.fitness_function) mean_squared_error() (in module bingo.evaluation.fitness_function) message (bingo.evolutionary_optimizers.evolutionary_optimizer.OptimizeResult attribute) model() (in module bingo.symbolic_regression.srbench_interface) module bingo bingo.chromosomes bingo.chromosomes.chromosome bingo.chromosomes.crossover bingo.chromosomes.generator bingo.chromosomes.multiple_floats bingo.chromosomes.multiple_values bingo.chromosomes.mutation bingo.evaluation bingo.evaluation.evaluation bingo.evaluation.fitness_function bingo.evaluation.gradient_mixin bingo.evaluation.random_subset_evaluation bingo.evaluation.training_data bingo.evolutionary_algorithms bingo.evolutionary_algorithms.age_fitness bingo.evolutionary_algorithms.ea_diagnostics bingo.evolutionary_algorithms.evolutionary_algorithm bingo.evolutionary_algorithms.generalized_crowding bingo.evolutionary_algorithms.mu_comma_lambda bingo.evolutionary_algorithms.mu_plus_lambda bingo.evolutionary_optimizers bingo.evolutionary_optimizers.archipelago bingo.evolutionary_optimizers.checkpoint_controller bingo.evolutionary_optimizers.evolutionary_optimizer bingo.evolutionary_optimizers.fitness_predictor bingo.evolutionary_optimizers.fitness_predictor_island bingo.evolutionary_optimizers.island bingo.evolutionary_optimizers.parallel_archipelago bingo.evolutionary_optimizers.serial_archipelago bingo.local_optimizers bingo.local_optimizers.local_opt_fitness bingo.local_optimizers.local_optimizer bingo.local_optimizers.normalized_marginal_likelihood bingo.local_optimizers.scipy_optimizer bingo.local_optimizers.smcpy_optimizer bingo.selection bingo.selection.age_fitness bingo.selection.deterministic_crowding bingo.selection.generalized_crowding bingo.selection.probabilistic_crowding bingo.selection.probabilistic_tournament bingo.selection.selection bingo.selection.tournament bingo.stats bingo.stats.hall_of_fame bingo.stats.pareto_front bingo.symbolic_regression bingo.symbolic_regression.agraph bingo.symbolic_regression.agraph.agraph bingo.symbolic_regression.agraph.component_generator bingo.symbolic_regression.agraph.crossover bingo.symbolic_regression.agraph.evaluation_backend bingo.symbolic_regression.agraph.evaluation_backend.evaluation_backend bingo.symbolic_regression.agraph.evaluation_backend.operator_eval bingo.symbolic_regression.agraph.generator bingo.symbolic_regression.agraph.mutation bingo.symbolic_regression.agraph.operator_definitions bingo.symbolic_regression.agraph.simplification_backend bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification bingo.symbolic_regression.agraph.simplification_backend.constant_folding bingo.symbolic_regression.agraph.simplification_backend.expression bingo.symbolic_regression.agraph.simplification_backend.interpreter bingo.symbolic_regression.agraph.simplification_backend.optional_expression_modification bingo.symbolic_regression.agraph.simplification_backend.simplification_backend bingo.symbolic_regression.agraph.simplification_backend.simplify bingo.symbolic_regression.agraph.string_generation bingo.symbolic_regression.agraph.string_parsing bingo.symbolic_regression.atomic_potential_regression bingo.symbolic_regression.equation bingo.symbolic_regression.equation_regressor bingo.symbolic_regression.explicit_regression bingo.symbolic_regression.implicit_regression bingo.symbolic_regression.implicit_regression_schmidt bingo.symbolic_regression.srbench_interface bingo.symbolic_regression.symbolic_regressor bingo.util bingo.util.argument_validation bingo.util.log bingo.util.probability_mass_function bingo.variation bingo.variation.add_random_individuals bingo.variation.var_and bingo.variation.var_or bingo.variation.variation

MpiFilter (class in bingo.util.log) MuCommaLambda (class in bingo.evolutionary_algorithms.mu_comma_lambda) MultipleFloatChromosome (class in bingo.chromosomes.multiple_floats) MultipleFloatChromosomeGenerator (class in bingo.chromosomes.multiple_floats) MultipleValueChromosome (class in bingo.chromosomes.multiple_values) MultipleValueChromosomeGenerator (class in bingo.chromosomes.multiple_values) MuPlusLambda (class in bingo.evolutionary_algorithms.mu_plus_lambda) mutable_command_array (bingo.symbolic_regression.agraph.agraph.AGraph attribute) (bingo.symbolic_regression.agraph.agraph.AGraph property) Mutation (class in bingo.chromosomes.mutation) mutation_offspring (bingo.variation.var_and.VarAnd attribute) (bingo.variation.var_or.VarOr attribute) mutation_offspring_type (bingo.variation.variation.Variation attribute) mutation_type_summary (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnostics attribute) (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnostics property) mutation_types (bingo.variation.variation.Variation attribute) (bingo.variation.variation.Variation property)

N

needs_local_optimization() (bingo.chromosomes.chromosome.Chromosome method) (bingo.chromosomes.multiple_floats.MultipleFloatChromosome method) (bingo.chromosomes.multiple_values.MultipleValueChromosome method) (bingo.symbolic_regression.agraph.agraph.AGraph method)

negative_nmll_laplace() (in module bingo.evaluation.fitness_function) ngen (bingo.evolutionary_optimizers.evolutionary_optimizer.OptimizeResult attribute) no_simplification() (in module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification) normalized_weights (bingo.util.probability_mass_function.ProbabilityMassFunction attribute) NormalizedMarginalLikelihood (class in bingo.local_optimizers.normalized_marginal_likelihood)

O

objective_fn (bingo.local_optimizers.local_optimizer.LocalOptimizer property) (bingo.local_optimizers.scipy_optimizer.ScipyOptimizer attribute) (bingo.local_optimizers.scipy_optimizer.ScipyOptimizer property) (bingo.local_optimizers.smcpy_optimizer.SmcpyOptimizer attribute) (bingo.local_optimizers.smcpy_optimizer.SmcpyOptimizer property) offspring_parents (bingo.variation.var_and.VarAnd attribute) (bingo.variation.var_or.VarOr attribute) (bingo.variation.variation.Variation attribute) operands (bingo.symbolic_regression.agraph.simplification_backend.expression.Expression property)

operator (bingo.symbolic_regression.agraph.simplification_backend.expression.Expression property) OPERATOR_NAMES (in module bingo.symbolic_regression.agraph.operator_definitions) OptimizeResult (class in bingo.evolutionary_optimizers.evolutionary_optimizer) optional_modifications() (in module bingo.symbolic_regression.agraph.simplification_backend.optional_expression_modification) options (bingo.local_optimizers.local_optimizer.LocalOptimizer property) (bingo.local_optimizers.scipy_optimizer.ScipyOptimizer attribute) (bingo.local_optimizers.scipy_optimizer.ScipyOptimizer property) (bingo.local_optimizers.smcpy_optimizer.SmcpyOptimizer attribute) (bingo.local_optimizers.smcpy_optimizer.SmcpyOptimizer property)

P

PairwiseAtomicPotential (class in bingo.symbolic_regression.atomic_potential_regression) PairwiseAtomicTrainingData (class in bingo.symbolic_regression.atomic_potential_regression) ParallelArchipelago (class in bingo.evolutionary_optimizers.parallel_archipelago) ParetoFront (class in bingo.stats.pareto_front) population (bingo.evolutionary_optimizers.fitness_predictor_island.FitnessPredictorIsland attribute) (bingo.evolutionary_optimizers.island.Island attribute)

postfix_to_command_array_and_constants() (in module bingo.symbolic_regression.agraph.string_parsing) predict() (bingo.symbolic_regression.equation_regressor.EquationRegressor method) (bingo.symbolic_regression.symbolic_regressor.SymbolicRegressor method) predict_fitness_for_trainer() (bingo.evolutionary_optimizers.fitness_predictor.FitnessPredictorFitnessFunction method) ProbabilisticCrowding (class in bingo.selection.probabilistic_crowding) ProbabilisticTournament (class in bingo.selection.probabilistic_tournament) ProbabilityMassFunction (class in bingo.util.probability_mass_function)

R

random_command() (bingo.symbolic_regression.agraph.component_generator.ComponentGenerator method) random_operator() (bingo.symbolic_regression.agraph.component_generator.ComponentGenerator method) random_operator_command() (bingo.symbolic_regression.agraph.component_generator.ComponentGenerator method) random_operator_parameter() (bingo.symbolic_regression.agraph.component_generator.ComponentGenerator static method) random_terminal() (bingo.symbolic_regression.agraph.component_generator.ComponentGenerator method) random_terminal_command() (bingo.symbolic_regression.agraph.component_generator.ComponentGenerator method) random_terminal_parameter() (bingo.symbolic_regression.agraph.component_generator.ComponentGenerator method) RandomSubsetEvaluation (class in bingo.evaluation.random_subset_evaluation)

record_check() (bingo.evolutionary_optimizers.checkpoint_controller.CheckpointController method) reduce_stack() (in module bingo.symbolic_regression.agraph.simplification_backend.simplification_backend) regenerate_population() (bingo.evolutionary_optimizers.island.Island method) remove() (bingo.stats.hall_of_fame.HallOfFame method) reset_fitness() (bingo.evolutionary_optimizers.island.Island method) reverse_eval_function() (in module bingo.symbolic_regression.agraph.evaluation_backend.operator_eval) REVERSE_EVAL_MAP (in module bingo.symbolic_regression.agraph.evaluation_backend.operator_eval) root_mean_squared_error() (in module bingo.evaluation.fitness_function)

S

ScipyOptimizer (class in bingo.local_optimizers.scipy_optimizer) selection (bingo.evolutionary_algorithms.age_fitness.AgeFitnessEA attribute) (bingo.evolutionary_algorithms.evolutionary_algorithm.EvolutionaryAlgorithm attribute) (bingo.evolutionary_algorithms.generalized_crowding.GeneralizedCrowdingEA attribute) (bingo.evolutionary_algorithms.mu_comma_lambda.MuCommaLambda attribute) (bingo.evolutionary_algorithms.mu_plus_lambda.MuPlusLambda attribute) Selection (class in bingo.selection.selection) SerialArchipelago (class in bingo.evolutionary_optimizers.serial_archipelago) set_fit_request() (bingo.symbolic_regression.equation_regressor.EquationRegressor method) (bingo.symbolic_regression.symbolic_regressor.SymbolicRegressor method) set_local_optimization_params() (bingo.chromosomes.chromosome.Chromosome method) (bingo.chromosomes.multiple_floats.MultipleFloatChromosome method) (bingo.chromosomes.multiple_values.MultipleValueChromosome method) (bingo.symbolic_regression.agraph.agraph.AGraph method) set_params() (bingo.symbolic_regression.symbolic_regressor.SymbolicRegressor method) set_score_request() (bingo.symbolic_regression.equation_regressor.EquationRegressor method) (bingo.symbolic_regression.symbolic_regressor.SymbolicRegressor method) simplify() (in module bingo.symbolic_regression.agraph.simplification_backend.simplify) simplify_cos() (in module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification) simplify_cosh() (in module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification)

simplify_difference() (in module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification) simplify_exponential() (in module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification) simplify_logarithm() (in module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification) simplify_power() (in module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification) simplify_product() (in module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification) simplify_quotient() (in module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification) simplify_sin() (in module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification) simplify_sinh() (in module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification) simplify_stack() (in module bingo.symbolic_regression.agraph.simplification_backend.simplification_backend) simplify_sum() (in module bingo.symbolic_regression.agraph.simplification_backend.automatic_simplification) SinglePointCrossover (class in bingo.chromosomes.multiple_values) SinglePointMutation (class in bingo.chromosomes.multiple_values) SmcpyOptimizer (class in bingo.local_optimizers.smcpy_optimizer) STACK_PRINT_MAP (in module bingo.symbolic_regression.agraph.string_generation) StatsFilter (class in bingo.util.log) status (bingo.evolutionary_optimizers.evolutionary_optimizer.OptimizeResult attribute) success (bingo.evolutionary_optimizers.evolutionary_optimizer.OptimizeResult attribute) summary (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnostics attribute) (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnostics property) SymbolicRegressor (class in bingo.symbolic_regression.symbolic_regressor) SYMPY_PRINT_MAP (in module bingo.symbolic_regression.agraph.string_generation)

T

term (bingo.symbolic_regression.agraph.simplification_backend.expression.Expression property) test_function (bingo.evolutionary_optimizers.evolutionary_optimizer.EvolutionaryOptimizer attribute) (bingo.evolutionary_optimizers.island.Island attribute) time (bingo.evolutionary_optimizers.evolutionary_optimizer.OptimizeResult attribute) Tournament (class in bingo.selection.tournament) training_data (bingo.evaluation.fitness_function.FitnessFunction attribute) (bingo.local_optimizers.local_opt_fitness.LocalOptFitnessFunction attribute) (bingo.local_optimizers.local_opt_fitness.LocalOptFitnessFunction property) (bingo.local_optimizers.normalized_marginal_likelihood.NormalizedMarginalLikelihood attribute) (bingo.local_optimizers.normalized_marginal_likelihood.NormalizedMarginalLikelihood property) (bingo.local_optimizers.smcpy_optimizer.SmcpyOptimizer property)

TrainingData (class in bingo.evaluation.training_data) types (bingo.chromosomes.multiple_values.SinglePointCrossover attribute) (bingo.chromosomes.multiple_values.SinglePointMutation attribute) (bingo.symbolic_regression.agraph.crossover.AGraphCrossover attribute) (bingo.symbolic_regression.agraph.mutation.AGraphMutation attribute)

U

update() (bingo.evolutionary_algorithms.ea_diagnostics.EaDiagnostics method) (bingo.stats.hall_of_fame.HallOfFame method) (bingo.stats.pareto_front.ParetoFront method)

update_diagnostics() (bingo.evolutionary_algorithms.evolutionary_algorithm.EvolutionaryAlgorithm method) update_hall_of_fame() (bingo.evolutionary_optimizers.evolutionary_optimizer.EvolutionaryOptimizer method)

V

values (bingo.chromosomes.multiple_values.MultipleValueChromosome attribute) VarAnd (class in bingo.variation.var_and) variation (bingo.evolutionary_algorithms.age_fitness.AgeFitnessEA attribute) (bingo.evolutionary_algorithms.evolutionary_algorithm.EvolutionaryAlgorithm attribute) (bingo.evolutionary_algorithms.generalized_crowding.GeneralizedCrowdingEA attribute) (bingo.evolutionary_algorithms.mu_comma_lambda.MuCommaLambda attribute) (bingo.evolutionary_algorithms.mu_plus_lambda.MuPlusLambda attribute)

Variation (class in bingo.variation.variation) VarOr (class in bingo.variation.var_or) VectorBasedFunction (class in bingo.evaluation.fitness_function) VectorGradientMixin (class in bingo.evaluation.gradient_mixin)

W

WORST_CASE_FACTOR (bingo.selection.age_fitness.AgeFitness attribute)

X

x (bingo.symbolic_regression.explicit_regression.ExplicitTrainingData property) (bingo.symbolic_regression.implicit_regression.ImplicitTrainingData attribute) (bingo.symbolic_regression.implicit_regression.ImplicitTrainingData property)

Y

y (bingo.symbolic_regression.explicit_regression.ExplicitTrainingData property)